STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06342.1Hypothetical protein; COG: COG3344 Retron-type reverse transcriptase. (70 aa)    
Predicted Functional Partners:
mboIIM_1
Putative DNA (cytosine-5-)-methyltransferase; KEGG: lic:LIC11323 5.2e-10 methyltransferase DNA modification enzyme K00571; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family.
       0.773
EDS06339.1
Hypothetical protein; KEGG: pol:Bpro_5394 1.0e-09 RNA-directed DNA polymerase K00986; COG: COG3344 Retron-type reverse transcriptase.
 
     0.706
dam
KEGG: mta:Moth_1737 2.2e-63 DNA adenine methylase K06223; COG: COG0338 Site-specific DNA methylase.
       0.467
EDS06344.1
Hypothetical protein; COG: COG3655 Predicted transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.464
EDS06346.1
AlwI restriction endonuclease; COG: NOG22471 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.464
EDS06341.1
Hypothetical protein; COG: COG2801 Transposase and inactivated derivatives.
       0.454
EDS08521.1
Hypothetical protein; COG: NOG19949 non supervised orthologous group.
  
     0.451
EDS05684.1
Hypothetical protein; KEGG: rpd:RPD_2368 0.0022 5-oxoprolinase (ATP-hydrolyzing) K01469; COG: COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.438
EDS05708.1
CRISPR-associated RAMP protein; COG: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); Psort location: Cytoplasmic, score: 8.87.
 
     0.436
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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