STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06346.1AlwI restriction endonuclease; COG: NOG22471 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (670 aa)    
Predicted Functional Partners:
dam
KEGG: mta:Moth_1737 2.2e-63 DNA adenine methylase K06223; COG: COG0338 Site-specific DNA methylase.
 
   
 0.963
EDS06344.1
Hypothetical protein; COG: COG3655 Predicted transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS06347.1
Hypothetical protein.
       0.623
EDS06348.1
Hypothetical protein.
       0.623
EDS07921.1
Conserved hypothetical protein TIGR02185; COG: NOG13235 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
   
 0.510
EDS06349.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.493
EDS06350.1
Hypothetical protein; COG: NOG06249 non supervised orthologous group.
       0.493
EDS06351.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.493
EDS05586.1
Hypothetical protein.
  
     0.476
EDS06342.1
Hypothetical protein; COG: COG3344 Retron-type reverse transcriptase.
       0.464
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.