STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06352.1Hypothetical protein; KEGG: xcb:XC_1846 0.0039 3-demethylubiquinone-9 3-methyltransferase K00568; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87. (100 aa)    
Predicted Functional Partners:
EDS06353.1
Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
     0.949
EDS06354.1
IstB-like ATP-binding protein; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.877
EDS05651.1
Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
     0.791
EDS07774.1
Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.783
EDS05951.1
COG: COG1484 DNA replication protein.
 
    0.779
EDS08593.1
COG: COG1484 DNA replication protein.
 
    0.773
EDS06355.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS06356.1
Hypothetical protein.
       0.762
EDS06357.1
SPFH/Band 7/PHB domain protein; KEGG: noc:Noc_2588 0.0094 HflK-like protein K04088; COG: COG0330 Membrane protease subunits, stomatin/prohibitin homologs; Psort location: Cytoplasmic, score: 8.87.
  
    0.605
EDS06358.1
COG: COG4877 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.584
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.