STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06353.1Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87. (386 aa)    
Predicted Functional Partners:
EDS06352.1
Hypothetical protein; KEGG: xcb:XC_1846 0.0039 3-demethylubiquinone-9 3-methyltransferase K00568; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
     0.949
EDS06354.1
IstB-like ATP-binding protein; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
    0.930
EDS05650.1
Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives.
 
     0.790
EDS05951.1
COG: COG1484 DNA replication protein.
 
    0.784
EDS08593.1
COG: COG1484 DNA replication protein.
 
    0.783
EDS06355.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS06356.1
Hypothetical protein.
       0.762
EDS06495.1
IstB-like ATP-binding protein; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
    0.706
EDS06105.1
IstB-like ATP-binding protein; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
    0.706
EDS05652.1
IstB-like ATP-binding protein; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
    0.706
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.