STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06360.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (664 aa)    
Predicted Functional Partners:
ytrB_1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL3623 1.3e-26 putative ABC transporter (partial match); COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.949
bltD
KEGG: baa:BA_3057 3.3e-14 acetyltransferase (GNAT) family K00663; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Psort location: Cytoplasmic, score: 8.87.
 
     0.714
XerD_2
Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.646
xerC_2
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.637
Noc
Hypothetical protein; KEGG: nwi:Nwi_0254 7.1e-05 helix-turn-helix, fis-type K00986; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.636
EDS08761.1
ABC-2 type transporter; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.585
EDS07373.1
VRR-NUC domain protein.
  
     0.559
YdjH_2
Kinase, PfkB family; KEGG: eci:UTI89_C1968 1.5e-66 ydjH; hypothetical sugar kinase YdjH K00874; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.98; Belongs to the carbohydrate kinase PfkB family.
       0.558
adaA_1
Transcriptional regulator, AraC family; KEGG: bsu:BG10166 5.2e-13 adaA; methylphosphotriester-DNA alkyltransferase / transcriptional regulator (AraC family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
       0.558
xerD_3
Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.554
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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