Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
adaA_1Transcriptional regulator, AraC family; KEGG: bsu:BG10166 5.2e-13 adaA; methylphosphotriester-DNA alkyltransferase / transcriptional regulator (AraC family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98. (279 aa)    
Predicted Functional Partners:
YdjH_2
Kinase, PfkB family; KEGG: eci:UTI89_C1968 1.5e-66 ydjH; hypothetical sugar kinase YdjH K00874; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.98; Belongs to the carbohydrate kinase PfkB family.
     
 0.782
Btr_2
KEGG: bcz:BCZK3497 1.4e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins.
 
   0.720
araC_2
KEGG: bcz:BCZK3497 2.2e-10 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.717
araC_6
KEGG: bcz:BCZK3497 4.6e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
0.589
ytrB_1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL3623 1.3e-26 putative ABC transporter (partial match); COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.563
EDS06360.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.558
EDS06363.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.544
YurK_2
UbiC transcription regulator-associated domain protein; KEGG: mtc:MT0817 2.6e-14 dihydrolipoamide dehydrogenase K00382; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.527
EDS06364.1
Hypothetical protein; COG: COG2407 L-fucose isomerase and related proteins; Psort location: Cytoplasmic, score: 8.87.
 
     0.527
yurK_1
Transcriptional regulator, GntR family; KEGG: reh:H16_A3019 0.00013 hutC; histidine utilization repressor; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.527
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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