STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adaA_1Transcriptional regulator, AraC family; KEGG: bsu:BG10166 5.2e-13 adaA; methylphosphotriester-DNA alkyltransferase / transcriptional regulator (AraC family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98. (279 aa)    
Predicted Functional Partners:
YdjH_2
Kinase, PfkB family; KEGG: eci:UTI89_C1968 1.5e-66 ydjH; hypothetical sugar kinase YdjH K00874; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.98; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.782
Btr_2
KEGG: bcz:BCZK3497 1.4e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins.
 
   0.723
araC_2
KEGG: bcz:BCZK3497 2.2e-10 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.715
araC_6
KEGG: bcz:BCZK3497 4.6e-13 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.98.
 
 
0.606
ytrB_1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL3623 1.3e-26 putative ABC transporter (partial match); COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.565
EDS06360.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.558
EDS06363.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.548
EDS06364.1
Hypothetical protein; COG: COG2407 L-fucose isomerase and related proteins; Psort location: Cytoplasmic, score: 8.87.
 
     0.529
AdhE
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpr:CPR_2540 0. aldehyde-alcohol dehydrogenase [includes: alcohol K00001:K04072; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.526
soxS_1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 4.2e-08 ADA regulatory protein K00567; COG: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; Psort location: Cytoplasmic, score: 9.98.
 
   0.499
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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