STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06368.1Transcriptional regulator, GntR family; KEGG: msm:MSMEG_3400 6.7e-14 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (247 aa)    
Predicted Functional Partners:
gntR_2
Transcriptional regulator, GntR family; KEGG: msm:MSMEG_3400 3.6e-05 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.773
uraA
Putative permease; KEGG: fal:FRAAL4724 0.00071 putative sulphate transporter and carbonic anhidrase K01672; COG: COG2233 Xanthine/uracil permeases; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
gntR_1
Transcriptional regulator, GntR family; KEGG: msm:MSMEG_3400 6.6e-06 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators.
  
     0.771
yiaO
TRAP transporter solute receptor, DctP family; COG: COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.661
pdhR
KEGG: reh:H16_A1958 9.4e-05 transcriptional regulator, MocR family; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.639
uehB
TRAP transporter, DctQ-like membrane protein; COG: COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; Psort location: CytoplasmicMembrane, score: 7.63.
 
     0.635
dctM
TRAP transporter, DctM subunit; COG: COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
    0.624
EDS06367.1
Hypothetical protein.
       0.572
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: ppr:PBPRA1276 3.3e-53 putative 2-keto-3-deoxy-6-phosphogluconatealdolase K01625:K01650; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.65.
 
   
 0.512
tdh_2
Putative chlorophyll synthesis pathway protein BchC; KEGG: oih:OB3353 1.2e-46 alcohol dehydrogenase K00100; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
     
 0.443
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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