Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kduD_1KEGG: oih:OB2814 4.2e-62 2-deoxy-D-gluconate 3-dehydrogenase K00065; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98. (255 aa)    
Predicted Functional Partners:
gnd
Phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
 0.951
KdgK
Hypothetical protein; KEGG: hso:HS_1329 3.2e-23 kdgK; 2-keto-3-deoxygluconate kinase K00874; COG: COG0524 Sugar kinases, ribokinase family.
 
 
 0.869
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: ppr:PBPRA1276 3.3e-53 putative 2-keto-3-deoxy-6-phosphogluconatealdolase K01625:K01650; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.65.
 
  
 0.813
rpe
KEGG: cno:NT01CX_2237 3.6e-56 ribulose-phosphate 3-epimerase K01783; COG: COG0036 Pentose-5-phosphate-3-epimerase; Psort location: Cytoplasmic, score: 8.87.
     
 0.806
RpiB_3
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: sth:STH2337 2.7e-26 ribose 5-phosphate isomerase K01808; COG: COG0698 Ribose 5-phosphate isomerase RpiB.
    
 0.802
rpiB_2
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: rru:Rru_A1334 9.7e-31 ribose 5-phosphate isomerase B K01819; COG: COG0698 Ribose 5-phosphate isomerase RpiB.
    
 0.802
rpiB
KEGG: sth:STH2337 6.2e-52 ribose 5-phosphate isomerase K01808; COG: COG0698 Ribose 5-phosphate isomerase RpiB; Psort location: Cytoplasmic, score: 8.87.
    
 0.802
rpiB_4
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: rru:Rru_A1334 1.1e-31 ribose 5-phosphate isomerase B K01819; COG: COG0698 Ribose 5-phosphate isomerase RpiB; Psort location: Cytoplasmic, score: 8.87.
    
 0.802
pdxB-5
KEGG: mja:MJ1018 3.9e-59 serA; phosphoglycerate dehydrogenase (SerA) K00058; COG: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.98; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 
 0.752
dctM
TRAP transporter, DctM subunit; COG: COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.682
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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