STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gndPhosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (464 aa)    
Predicted Functional Partners:
lyx_2
Carbohydrate kinase, FGGY family protein; KEGG: gka:GK1941 2.2e-56 gluconokinase K00851; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.965
kduD_1
KEGG: oih:OB2814 4.2e-62 2-deoxy-D-gluconate 3-dehydrogenase K00065; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
  
 0.953
rpe
KEGG: cno:NT01CX_2237 3.6e-56 ribulose-phosphate 3-epimerase K01783; COG: COG0036 Pentose-5-phosphate-3-epimerase; Psort location: Cytoplasmic, score: 8.87.
   
 0.939
RpiB_3
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: sth:STH2337 2.7e-26 ribose 5-phosphate isomerase K01808; COG: COG0698 Ribose 5-phosphate isomerase RpiB.
    
 0.912
rpiB_2
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: rru:Rru_A1334 9.7e-31 ribose 5-phosphate isomerase B K01819; COG: COG0698 Ribose 5-phosphate isomerase RpiB.
    
 0.912
rpiB
KEGG: sth:STH2337 6.2e-52 ribose 5-phosphate isomerase K01808; COG: COG0698 Ribose 5-phosphate isomerase RpiB; Psort location: Cytoplasmic, score: 8.87.
    
 0.912
rpiB_4
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: rru:Rru_A1334 1.1e-31 ribose 5-phosphate isomerase B K01819; COG: COG0698 Ribose 5-phosphate isomerase RpiB; Psort location: Cytoplasmic, score: 8.87.
    
 0.912
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 
 
 0.889
KduD_2
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: ecs:ECs3630 1.5e-89 putative oxidoreductase; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
  
 0.828
XylB_7
KEGG: tma:TM0284 3.5e-42 sugar kinase, FGGY family K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
    
 0.809
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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