STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxB-5KEGG: mja:MJ1018 3.9e-59 serA; phosphoglycerate dehydrogenase (SerA) K00058; COG: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.98; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (319 aa)    
Predicted Functional Partners:
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: ppr:PBPRA1276 3.3e-53 putative 2-keto-3-deoxy-6-phosphogluconatealdolase K01625:K01650; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 9.65.
    
 0.963
pdxB-6
KEGG: cff:CFF8240_1663 7.1e-67 hprA; glycerate dehydrogenase K00018; COG: COG1052 Lactate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.98; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
0.927
GarR_2
Putative 2-hydroxy-3-oxopropionate reductase; KEGG: sec:SC3195 1.9e-75 garR, tsaR; tartronate semialdehyde reductase (TSAR) K00042; COG: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.
 
  
  0.914
EDS08080.1
Haloacid dehalogenase-like hydrolase; KEGG: smu:SMU.1254 7.6e-63 conserved hypothetical protein K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.87.
    
 0.903
Gph_3
Putative phosphoglycolate phosphatase, bacterial; KEGG: tde:TDE2716 3.7e-47 HAD-superfamily hydrolase, subfamily IA K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.87.
    
 0.903
gph_1
HAD hydrolase, family IA, variant 1; KEGG: lil:LA2702 1.6e-12 phosphoglycolate phosphatase K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.87.
    
 0.903
GarK
Glycerate kinase; KEGG: sak:SAK_0918 1.4e-109 glycerate kinase K00865; COG: COG1929 Glycerate kinase; Belongs to the glycerate kinase type-1 family.
    
  0.901
kduD_1
KEGG: oih:OB2814 4.2e-62 2-deoxy-D-gluconate 3-dehydrogenase K00065; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
 
 
 0.756
gnd
Phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
  
 0.753
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
 
 0.703
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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