Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
EDS06386.1Oxidoreductase, zinc-binding dehydrogenase family protein; KEGG: oih:OB3258 4.0e-25 sorbitol dehydrogenase K00008; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Psort location: Cytoplasmic, score: 9.98. (200 aa)    
Predicted Functional Partners:
gutB
L-iditol 2-dehydrogenase; KEGG: rde:RD1_0514 2.3e-38 gutB; sorbitol dehydrogenase, putative K00008; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
  
     0.773
EltD_2
Oxidoreductase, zinc-binding dehydrogenase family protein; KEGG: hch:HCH_02471 4.5e-49 threonine dehydrogenase and related Zn-dependent dehydrogenase K00008; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
     0.712
EDS06387.1
Hypothetical protein; KEGG: eci:UTI89_C4465 3.7e-06 putative dehydrogenase K00001; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
       0.571
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.442
gph_1
HAD hydrolase, family IA, variant 1; KEGG: lil:LA2702 1.6e-12 phosphoglycolate phosphatase K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.87.
       0.425
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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