Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gph_1HAD hydrolase, family IA, variant 1; KEGG: lil:LA2702 1.6e-12 phosphoglycolate phosphatase K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.87. (213 aa)    
Predicted Functional Partners:
EDS08080.1
Haloacid dehalogenase-like hydrolase; KEGG: smu:SMU.1254 7.6e-63 conserved hypothetical protein K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.87.
  
  
  0.914
Gph_3
Putative phosphoglycolate phosphatase, bacterial; KEGG: tde:TDE2716 3.7e-47 HAD-superfamily hydrolase, subfamily IA K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.87.
     
  0.900
ubiB
ABC1 family protein; KEGG: fth:FTH_0399 6.3e-43 ubiB; ubiquinone biosynthesis protein K00492; COG: COG0661 Predicted unusual protein kinase; Psort location: Cytoplasmic, score: 8.87.
  
    0.729
EDS06387.1
Hypothetical protein; KEGG: eci:UTI89_C4465 3.7e-06 putative dehydrogenase K00001; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
       0.557
moaA_2
Molybdenum cofactor biosynthesis protein A family protein; KEGG: mka:MK1086 0.0025 ferredoxin domain fused to pyruvate-formate lyase-activating enzyme K04069; COG: COG2896 Molybdenum cofactor biosynthesis enzyme; Psort location: Cytoplasmic, score: 8.87.
  
    0.553
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.515
EDS06386.1
Oxidoreductase, zinc-binding dehydrogenase family protein; KEGG: oih:OB3258 4.0e-25 sorbitol dehydrogenase K00008; COG: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
       0.425
hisE
phosphoribosyl-ATP diphosphatase; KEGG: sao:SAOUHSC_03008 3.6e-56 imidazole glycerol phosphate synthase subunit HisF, putative K01663; COG: COG0139 Phosphoribosyl-AMP cyclohydrolase; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the PRA-PH family.
  
  
 0.402
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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