Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylB_3Carbohydrate kinase, FGGY family protein; KEGG: bth:BT4423 2.9e-118 xylulose kinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87. (505 aa)    
Predicted Functional Partners:
rpe
KEGG: cno:NT01CX_2237 3.6e-56 ribulose-phosphate 3-epimerase K01783; COG: COG0036 Pentose-5-phosphate-3-epimerase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.921
AraD
KEGG: bld:BLi02063 3.6e-79 putative L-ribulose-5-phosphate 4-epimerase; RBL00998 K03077; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
 
 0.918
ulaF
KEGG: san:gbs1851 4.0e-80 similar to L-ribulose-5-phosphate 4-epimerase K01786; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.918
EDS06728.1
Hypothetical protein; COG: COG3822 ABC-type sugar transport system, auxiliary component.
    
  0.902
EDS06409.1
AP endonuclease, family 2; KEGG: rba:RB11728 2.0e-23 putative tagatose 3-epimerase K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87.
 
     0.699
rhaB-2
Rhamnulokinase; KEGG: bha:BH1551 5.4e-133 rhamnulokinase K00848; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
 
    
0.604
EDS06411.1
AP endonuclease, family 2; KEGG: rba:RB11728 1.6e-30 putative tagatose 3-epimerase K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87.
 
     0.568
fsaA
KEGG: lpl:lp_2600 3.5e-58 tal1; transaldolase K01636; COG: COG0176 Transaldolase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.533
SrlR_1
Transcriptional regulator, DeoR family; KEGG: net:Neut_1829 0.00052 ribose 5-phosphate isomerase K01806; COG: COG1349 Transcriptional regulators of sugar metabolism.
       0.510
xylB_2
KEGG: tma:TM0284 1.5e-137 sugar kinase, FGGY family K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
 
    
0.480
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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