Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS06411.1AP endonuclease, family 2; KEGG: rba:RB11728 1.6e-30 putative tagatose 3-epimerase K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87. (289 aa)    
Predicted Functional Partners:
rhaB-2
Rhamnulokinase; KEGG: bha:BH1551 5.4e-133 rhamnulokinase K00848; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
 
     0.733
EDS06409.1
AP endonuclease, family 2; KEGG: rba:RB11728 2.0e-23 putative tagatose 3-epimerase K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87.
 
   
0.641
xylB_3
Carbohydrate kinase, FGGY family protein; KEGG: bth:BT4423 2.9e-118 xylulose kinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
 
     0.568
lsrB
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.8e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
    0.539
xylB_2
KEGG: tma:TM0284 1.5e-137 sugar kinase, FGGY family K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
       0.500
EDS06985.1
Hypothetical protein; KEGG: bfs:BF1664 4.3e-06 putative mannose-6-phosphate isomerase K01809; COG: NOG26319 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.495
SrlR_1
Transcriptional regulator, DeoR family; KEGG: net:Neut_1829 0.00052 ribose 5-phosphate isomerase K01806; COG: COG1349 Transcriptional regulators of sugar metabolism.
 
   
 0.446
EDS05232.1
Hypothetical protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
    0.402
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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