Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cwlC_1KEGG: bsu:BG10825 1.1e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87. (253 aa)    
Predicted Functional Partners:
cwlD
KEGG: bce:BC0167 2.4e-34 spore-specific N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
 
0.945
mrcA
Penicillin-binding protein, 1A family; KEGG: tte:TTE0314 1.1e-102 mrcA; Membrane carboxypeptidase (penicillin-binding protein) K05366; COG: COG0744 Membrane carboxypeptidase (penicillin-binding protein); Psort location: Extracellular, score: 9.55.
 
 
 
 0.874
divIB
Hypothetical protein; COG: COG1589 Cell division septal protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.726
mepM_1
KEGG: cya:CYA_1627 1.7e-20 peptidase, M23B family; COG: COG0739 Membrane proteins related to metalloendopeptidases.
 
  
 0.575
lytG
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; KEGG: cno:NT01CX_2157 9.9e-26 N-acetylmuramoyl-L-alanine amidase CwlL precursor (cellwall hydrolase) (autolysin) K01446; COG: COG1705 Muramidase (flagellum-specific); Psort location: Extracellular, score: 9.55.
 
  
 0.567
EDS06911.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.553
mepM_2
Peptidase, M23 family; KEGG: ava:Ava_0183 2.0e-48 peptidase M23B K08259; COG: COG0739 Membrane proteins related to metalloendopeptidases; Psort location: Extracellular, score: 9.95.
 
 
 
 0.525
rpoD-2
Hypothetical protein; KEGG: reh:H16_A1626 3.9e-06 rpoD1; DNA-directed RNA polymerase sigma subunit (RpoD) K00960; COG: COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Psort location: Cytoplasmic, score: 9.98.
     
 0.516
EDS05569.1
KEGG: bha:BH0810 2.2e-24 N-acetylmuramoyl-L-alanine amidase K01448; COG: NOG18564 non supervised orthologous group.
 
 
0.504
EDS06909.1
LysM domain protein; KEGG: lsl:LSL_0304 0.0019 phage lysin K01185; COG: NOG23722 non supervised orthologous group.
 
  
 0.494
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.