Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06198.1Hypothetical protein; COG: COG4646 DNA methylase; Psort location: Cytoplasmic, score: 8.87. (289 aa)    
Predicted Functional Partners:
EDS05616.1
N-6 DNA Methylase; KEGG: chu:CHU_1468 6.8e-12 dpn; possible adenine-specific DNA methylase K00599; COG: COG4646 DNA methylase; Psort location: Cytoplasmic, score: 8.87.
     0.977
hsdS
KEGG: dde:Dde_2496 4.1e-48 subunit S of type I restriction-modification system K01154; COG: COG0732 Restriction endonuclease S subunits; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.775
EDS05383.1
Type I restriction modification DNA specificity domain protein; KEGG: mba:Mbar_A1015 3.5e-42 putative type I restriction enzyme, S subunit K01154; COG: COG0732 Restriction endonuclease S subunits.
  
 
 0.775
EDS06204.1
Toprim domain protein; COG: NOG14428 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.762
EDS06217.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.748
EDS06213.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.745
EDS06199.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.741
EDS06211.1
TraG family protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.738
EDS06207.1
Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
 
     0.729
EDS05218.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
     0.706
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.