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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06200.1COG: COG4859 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (140 aa)    
Predicted Functional Partners:
EDS08803.1
Hypothetical protein; KEGG: bme:BMEI1837 0.00077 cellobiose-phosphorylase K00702; COG: COG1621 Beta-fructosidases (levanase/invertase); Psort location: Cytoplasmic, score: 8.87.
  
     0.639
EDS06199.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.491
EDS06198.1
Hypothetical protein; COG: COG4646 DNA methylase; Psort location: Cytoplasmic, score: 8.87.
       0.465
EDS07358.1
DNA-binding helix-turn-helix protein; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87.
  
     0.442
EDS06201.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.439
EDS08772.1
Hypothetical protein; COG: NOG20173 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.406
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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