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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06205.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (129 aa)    
Predicted Functional Partners:
EDS06204.1
Toprim domain protein; COG: NOG14428 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.803
EDS06206.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.497
EDS06208.1
Hypothetical protein; KEGG: pca:Pcar_2039 3.4e-05 ribonuclease, Rne/Rng family protein; COG: COG1498 Protein implicated in ribosomal biogenesis, Nop56p homolog; Psort location: Cytoplasmic, score: 8.87.
       0.497
EDS06209.1
Hypothetical protein; COG: NOG17367 non supervised orthologous group.
       0.497
EDS06210.1
Hypothetical protein.
       0.468
EDS06203.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.456
EDS06207.1
Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
       0.446
EDS06211.1
TraG family protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
       0.426
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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