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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ltrA_1Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: spi:MGAS10750_Spy1709 7.8e-148 reverse transcriptase / RNA maturase / endonuclease K00986; COG: COG3344 Retron-type reverse transcriptase. (628 aa)    
Predicted Functional Partners:
EDS07406.1
Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: rba:RB818 3.1e-10 reverse transcriptase/maturase K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87.
  
     0.742
EDS06339.1
Hypothetical protein; KEGG: pol:Bpro_5394 1.0e-09 RNA-directed DNA polymerase K00986; COG: COG3344 Retron-type reverse transcriptase.
  
     0.645
EDS06213.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
       0.509
EDS06214.1
Hypothetical protein; KEGG: spj:MGAS2096_Spy1129 6.7e-39 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K01957; Psort location: CytoplasmicMembrane, score: 9.26.
       0.484
EDS06216.1
Hypothetical protein.
 
     0.431
EDS06219.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.430
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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