Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06219.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (134 aa)    
Predicted Functional Partners:
EDS06221.1
Hypothetical protein; KEGG: rpc:RPC_3427 7.1e-09 adenylate kinases K00939; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
     0.912
EDS06216.1
Hypothetical protein.
 
     0.906
EDS06215.1
Hypothetical protein; COG: NOG32086 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.894
EDS06217.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score: 8.87.
 
    0.880
srtB-3
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
 
    0.869
EDS06214.1
Hypothetical protein; KEGG: spj:MGAS2096_Spy1129 6.7e-39 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K01957; Psort location: CytoplasmicMembrane, score: 9.26.
 
     0.857
EDS06213.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
    0.801
MboIIM_2
DNA (cytosine-5-)-methyltransferase; KEGG: spj:MGAS2096_Spy1124 6.6e-112 adenine-specific methyltransferase K00571; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family.
       0.774
EDS06208.1
Hypothetical protein; KEGG: pca:Pcar_2039 3.4e-05 ribonuclease, Rne/Rng family protein; COG: COG1498 Protein implicated in ribosomal biogenesis, Nop56p homolog; Psort location: Cytoplasmic, score: 8.87.
 
     0.763
EDS06206.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.762
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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