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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srtB-3Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria. (257 aa)    
Predicted Functional Partners:
EDS06221.1
Hypothetical protein; KEGG: rpc:RPC_3427 7.1e-09 adenylate kinases K00939; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
     0.908
EDS06219.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.869
EDS06216.1
Hypothetical protein.
 
     0.816
EDS05622.1
LPXTG-motif cell wall anchor domain protein; KEGG: mmr:Mmar10_2493 0.0012 serralysin K01406; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.98.
 
   0.802
MboIIM_2
DNA (cytosine-5-)-methyltransferase; KEGG: spj:MGAS2096_Spy1124 6.6e-112 adenine-specific methyltransferase K00571; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family.
       0.737
EDS06217.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.722
EDS06215.1
Hypothetical protein; COG: NOG32086 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.711
EDS05618.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.669
cinA_2
Competence/damage-inducible domain protein CinA; KEGG: hsa:80308 5.5e-07 FLAD1; FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) K00953; COG: COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Psort location: Cytoplasmic, score: 8.87; Belongs to the CinA family.
      0.663
EDS06214.1
Hypothetical protein; KEGG: spj:MGAS2096_Spy1129 6.7e-39 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K01957; Psort location: CytoplasmicMembrane, score: 9.26.
 
     0.649
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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