STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrR_2Transcriptional regulator, TetR family; KEGG: bha:BH3415 0.00026 NADH dehydrogenase K03885; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87. (186 aa)    
Predicted Functional Partners:
menG
Methyltransferase domain protein; KEGG: sru:SRU_1592 2.7e-19 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.838
mepA_1
MATE efflux family protein; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.652
TtgR
Transcriptional regulator, TetR family; KEGG: bcl:ABC2937 0.0030 NADH dehydrogenase K03885; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
  
     0.629
EDS06243.1
Restriction endonuclease; COG: NOG37482 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.502
srpR_1
Transcriptional regulator, TetR family; KEGG: bha:BH3415 5.1e-10 NADH dehydrogenase K03885; COG: NOG38850 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.469
EDS06224.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.442
fokIM
KEGG: hhe:HH1050 1.4e-14 putative site-specific DNA-methyltransferase K07318; COG: COG3392 Adenine-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
  
     0.441
EDS06227.1
Hypothetical protein; COG: COG1321 Mn-dependent transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.440
EDS05115.1
Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.416
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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