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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recF_1Hypothetical protein; COG: COG3593 Predicted ATP-dependent endonuclease of the OLD family; Psort location: Cytoplasmic, score: 8.87. (677 aa)    
Predicted Functional Partners:
rep
Hypothetical protein; KEGG: gbe:GbCGDNIH1_1179 1.3e-76 DNA helicase II K01529; COG: COG0210 Superfamily I DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
 
     0.948
EDS08687.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.719
EDS06243.1
Restriction endonuclease; COG: NOG37482 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.687
fokIM
KEGG: hhe:HH1050 1.4e-14 putative site-specific DNA-methyltransferase K07318; COG: COG3392 Adenine-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
       0.687
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.599
EDS06245.1
Hypothetical protein; COG: COG1373 Predicted ATPase (AAA+ superfamily); Psort location: Cytoplasmic, score: 8.87.
       0.552
EDS05961.1
Transposase; COG: COG2963 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.550
EDS06515.1
Hypothetical protein.
  
     0.548
flr_1
Flavin reductase-like protein; COG: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; Psort location: Cytoplasmic, score: 8.87.
  
     0.545
EDS05484.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.544
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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