STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06249.1DNA binding domain, excisionase family. (80 aa)    
Predicted Functional Partners:
XerC_3
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
   
 0.878
EDS06250.1
DNA binding domain, excisionase family.
 
     0.873
EDS06046.1
Bacterial mobilization protein MobC; Psort location: Cytoplasmic, score: 8.87.
 
     0.542
EDS06251.1
DNA binding domain, excisionase family.
 
    
0.516
EDS07901.1
Bacterial mobilization protein MobC; KEGG: rde:RD1_A0111 0.00012 virD1; VirD1; Psort location: Cytoplasmic, score: 8.87.
 
     0.493
EDS07907.1
Hypothetical protein; KEGG: nph:NP1018A 0.0013 atpH; H(+)-transporting two-sector ATPase subunit H.a (A-type ATP synthase) K02121.
  
     0.487
EDS06248.1
Transposase; COG: COG3547 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.482
thyX
Hypothetical protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
 
     0.462
EDS05728.1
Hypothetical protein; KEGG: eba:ebA4079 0.0032 dnaB; replicative DNA helicase protein K02314; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.457
EDS07358.1
DNA-binding helix-turn-helix protein; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87.
 
    0.429
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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