Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilTTwitching motility protein; KEGG: pen:PSEEN2333 1.4e-23 xcpR-2; type II secretion pathway protein E K01509; COG: COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; Psort location: Cytoplasmic, score: 9.36. (353 aa)    
Predicted Functional Partners:
gspF
Bacterial type II secretion system domain protein F; COG: COG1459 Type II secretory pathway, component PulF; Psort location: CytoplasmicMembrane, score: 9.97.
 
  
 0.919
EDS06264.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.889
EDS06261.1
Hypothetical protein.
 
     0.867
EDS06263.1
Hypothetical protein.
 
     0.853
comC
Bacterial peptidase A24, N-terminal domain protein; KEGG: tte:TTE1266 3.5e-42 pppA; leader peptidase (prepilin peptidase) / N-methyltransferase K02654; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.843
EDS06266.1
Hypothetical protein; COG: COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
 
     0.822
EDS06262.1
Hypothetical protein.
 
     0.773
ycdT
Diguanylate cyclase (GGDEF) domain protein; KEGG: eci:UTI89_C2343 2.6e-18 yegE; putative sensor-type protein; COG: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.671
adrA
Diguanylate cyclase (GGDEF) domain protein; KEGG: shn:Shewana3_3829 1.9e-24 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.633
Gmr
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VFA0796 2.2e-06 sensor protein; COG: COG2199 FOG: GGDEF domain; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.597
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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