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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06262.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
EDS06263.1
Hypothetical protein.
 
     0.959
EDS06264.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.956
EDS06261.1
Hypothetical protein.
 
     0.932
EDS06266.1
Hypothetical protein; COG: COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
 
     0.895
gspF
Bacterial type II secretion system domain protein F; COG: COG1459 Type II secretory pathway, component PulF; Psort location: CytoplasmicMembrane, score: 9.97.
 
     0.840
pilT
Twitching motility protein; KEGG: pen:PSEEN2333 1.4e-23 xcpR-2; type II secretion pathway protein E K01509; COG: COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; Psort location: Cytoplasmic, score: 9.36.
 
     0.795
EDS08035.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.610
EDS06078.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.564
EDS08038.1
Hypothetical protein; KEGG: reh:H16_B1607 0.0014 tow domain protein: DNA-binding transcriptional activator of the SARP family; Psort location: Cytoplasmic, score: 8.87.
 
     0.544
EDS08034.1
KEGG: ljo:LJ1840 0.0063 cell wall-associated serine proteinase K01361; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.99.
  
     0.490
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.