Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EDS06266.1Hypothetical protein; COG: COG1305 Transglutaminase-like enzymes, putative cysteine proteases. (318 aa)    
Predicted Functional Partners:
gspF
Bacterial type II secretion system domain protein F; COG: COG1459 Type II secretory pathway, component PulF; Psort location: CytoplasmicMembrane, score: 9.97.
 
     0.936
EDS06263.1
Hypothetical protein.
 
     0.892
EDS06264.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.892
EDS06262.1
Hypothetical protein.
 
     0.884
EDS06261.1
Hypothetical protein.
 
     0.875
pilT
Twitching motility protein; KEGG: pen:PSEEN2333 1.4e-23 xcpR-2; type II secretion pathway protein E K01509; COG: COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; Psort location: Cytoplasmic, score: 9.36.
 
     0.822
EDS06267.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.775
Gmr
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VFA0796 2.2e-06 sensor protein; COG: COG2199 FOG: GGDEF domain; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.740
EDS08035.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.689
EDS08038.1
Hypothetical protein; KEGG: reh:H16_B1607 0.0014 tow domain protein: DNA-binding transcriptional activator of the SARP family; Psort location: Cytoplasmic, score: 8.87.
 
     0.664
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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