Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
spoIIQKEGG: cya:CYA_2269 7.0e-05 peptidase, M23B family; COG: COG0739 Membrane proteins related to metalloendopeptidases. (250 aa)    
Predicted Functional Partners:
lytB_2
SpoIID/LytB domain protein; COG: COG2385 Sporulation protein and related proteins.
 
   
 0.726
EDS05758.1
LysM domain protein; KEGG: oih:OB0220 0.0012 N-acetylmuramoyl-L-alanine amidase (autolysine) K01448; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.687
EDS07977.1
Hypothetical protein; KEGG: rno:309804 1.6e-08 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208; COG: KOG3544 Collagens (type IV and type XIII), and related proteins; Psort location: Cytoplasmic, score: 8.87.
  
 
   0.656
EDS08111.1
Hypothetical protein; KEGG: ccr:CC0365 0.0040 F-type H+-transporting ATPase b chain K02109; COG: NOG17862 non supervised orthologous group.
  
  
 0.635
SpoIIIAE
Putative stage III sporulation protein AE; COG: NOG06161 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.632
cotS
Spore coat protein, CotS family; COG: NOG09979 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.627
EDS07659.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.625
spoIIP
Stage II sporulation protein P; COG: NOG13213 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.618
EDS07956.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.611
EDS07652.1
Hypothetical protein; KEGG: ctc:CTC00811 3.5e-07 fumarate reductase flavoprotein subunit precursor K00244; COG: COG3976 Uncharacterized protein conserved in bacteria.
  
     0.604
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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