Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RbrRubrerythrin; KEGG: cpr:CPR_0938 2.1e-51 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin; Psort location: Cytoplasmic, score: 8.87. (195 aa)    
Predicted Functional Partners:
dfx_1
Putative superoxide reductase; KEGG: ppd:Ppro_1133 4.5e-17 desulfoferrodoxin K00518; COG: COG2033 Desulfoferrodoxin; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.906
dfx_2
Superoxide reductase; KEGG: mta:Moth_1285 2.2e-10 desulfoferrodoxin K00518; COG: COG2033 Desulfoferrodoxin; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.846
PerR
Transcriptional regulator, Fur family; COG: COG0735 Fe2+/Zn2+ uptake regulation proteins; Psort location: Cytoplasmic, score: 8.87; Belongs to the Fur family.
  
  
 0.825
EDS06718.1
Rubredoxin; KEGG: cpr:CPR_0938 1.8e-219 periplasmic [Fe] hydrogenase 1 K00532; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.747
rbr3A
Rubredoxin; KEGG: cpr:CPR_0938 1.9e-06 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.730
fur_2
Transcriptional regulator, Fur family; COG: COG0735 Fe2+/Zn2+ uptake regulation proteins; Psort location: Cytoplasmic, score: 9.98; Belongs to the Fur family.
  
  
 0.724
Fur_1
Hypothetical protein; COG: COG0735 Fe2+/Zn2+ uptake regulation proteins; Psort location: Cytoplasmic, score: 8.87; Belongs to the Fur family.
  
  
 0.724
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.721
hrb
Rubredoxin; KEGG: sat:SYN_02123 4.7e-47 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin.
 
  
 0.701
fprA1
Metallo-beta-lactamase domain protein; KEGG: eci:UTI89_C3072 1.2e-46 norV; anaerobic nitric oxide reductase flavorubredoxin; COG: COG0426 Uncharacterized flavoproteins; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.663
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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