Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS06288.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (90 aa)    
Predicted Functional Partners:
YdhD
SH3 domain protein; KEGG: ctc:CTC01180 6.5e-21 spore peptidoglycan hydrolase (N-acetylglucosaminidase) K06306; COG: COG3858 Predicted glycosyl hydrolase.
       0.621
EDS06289.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.620
EDS06287.1
Hypothetical protein.
       0.566
cwlD
KEGG: bce:BC0167 2.4e-34 spore-specific N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
       0.465
ywlC
Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.453
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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