Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06297.1Hypothetical protein; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87. (305 aa)    
Predicted Functional Partners:
EDS06300.1
Bacterial type II secretion system domain protein F; COG: COG2064 Flp pilus assembly protein TadC; Psort location: CytoplasmicMembrane, score: 9.75.
 
  
 0.970
EDS06299.1
Bacterial type II secretion system domain protein F; COG: COG4965 Flp pilus assembly protein TadB; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.967
EDS06302.1
Hypothetical protein.
 
  
 0.945
EDS06298.1
Type II/IV secretion system protein; KEGG: reh:H16_A0983 1.5e-87 cpaF3; flp pilus assembly ATPase CpaF K01529; COG: COG4962 Flp pilus assembly protein, ATPase CpaF; Psort location: Cytoplasmic, score: 9.98.
 
  
 0.934
EDS06303.1
Peptidase, A24 family; KEGG: sth:STH1951 7.9e-13 type IV prepilin-like leader peptide processing enzyme K02654; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score: 9.75.
 
  
 0.907
EDS06301.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.870
EDS06305.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.856
FtsL_2
Hypothetical protein.
  
     0.757
ftsL_1
COG: COG2919 Septum formation initiator.
  
     0.751
EDS06910.1
Hypothetical protein; KEGG: oih:OB2490 0.00066 carboxy-terminal processing protease K03797.
  
     0.743
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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