Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06301.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (508 aa)    
Predicted Functional Partners:
EDS06302.1
Hypothetical protein.
 
     0.959
EDS06305.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.959
EDS06303.1
Peptidase, A24 family; KEGG: sth:STH1951 7.9e-13 type IV prepilin-like leader peptide processing enzyme K02654; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score: 9.75.
 
     0.935
EDS06300.1
Bacterial type II secretion system domain protein F; COG: COG2064 Flp pilus assembly protein TadC; Psort location: CytoplasmicMembrane, score: 9.75.
 
     0.914
EDS06297.1
Hypothetical protein; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87.
 
     0.870
EDS06332.1
Tetratricopeptide repeat protein; KEGG: mpe:MYPE6470 1.2e-26 parC; DNA topoisomerase IV subunit A K02621; COG: KOG1181 FOG: Low-complexity; Psort location: Extracellular, score: 7.62.
 
 
 0.813
EDS06299.1
Bacterial type II secretion system domain protein F; COG: COG4965 Flp pilus assembly protein TadB; Psort location: Cytoplasmic, score: 8.87.
 
    0.803
EDS08291.1
Tetratricopeptide repeat protein; KEGG: mth:MTH977 0.00053 endo-1,4-beta-glucanase related protein K01179; COG: COG3291 FOG: PKD repeat; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.790
EDS06304.1
Hypothetical protein.
       0.779
EDS08472.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.777
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.