Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
speAOrn/Lys/Arg decarboxylase, major domain protein; KEGG: tte:TTE0093 2.5e-71 ldcC; Arginine/lysine/ornithine decarboxylases K01582; COG: COG1982 Arginine/lysine/ornithine decarboxylases; Psort location: Cytoplasmic, score: 8.87. (484 aa)    
Predicted Functional Partners:
yfiC
Methyltransferase domain protein; KEGG: ctc:CTC00225 2.9e-54 methyltransferase K00599; COG: COG4123 Predicted O-methyltransferase; Psort location: Cytoplasmic, score: 8.87.
  
    0.848
EDS06321.1
PSP1 C-terminal domain protein; COG: COG1774 Uncharacterized homolog of PSP1; Psort location: Cytoplasmic, score: 8.87.
  
    0.837
argH
Argininosuccinate lyase; KEGG: cpe:CPE0690 2.3e-139 argH; argininosuccinate lyase K01755; COG: COG0165 Argininosuccinate lyase; Psort location: Cytoplasmic, score: 8.87.
     
 0.830
gmk_1
Hypothetical protein; KEGG: tws:TW406 1.8e-09 gmk; guanylate kinase K00942; COG: COG0194 Guanylate kinase; Psort location: Cytoplasmic, score: 8.87.
       0.830
dnaX_1
Putative DNA polymerase III, subunit gamma and tau; KEGG: tte:TTE0097 3.4e-51 holB; ATPase involved in DNA replication K02341; COG: COG2812 DNA polymerase III, gamma/tau subunits; Psort location: Cytoplasmic, score: 8.87.
       0.830
pgi
KEGG: bcl:ABC2906 1.4e-164 pgi; glucose-6-phosphate isomerase K01810; COG: COG0166 Glucose-6-phosphate isomerase; Psort location: Cytoplasmic, score: 9.98; Belongs to the GPI family.
       0.780
megL
Aluminum resistance protein; KEGG: ava:Ava_4213 1.1e-100 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K01758; COG: COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.762
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.760
EDS06316.1
Hypothetical protein; KEGG: bba:Bd1032 0.0026 mepA; hypothetical protein K07261; Psort location: CytoplasmicMembrane, score: 7.63.
       0.629
EDS08594.1
Hypothetical protein; COG: COG0714 MoxR-like ATPases; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.602
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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