STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppCABC transporter, permease protein; KEGG: syn:sll0739 0.0032 modBC; ABC-type molybdate transport system permease/ATP-binding protein K02018; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00. (274 aa)    
Predicted Functional Partners:
dppB_3
KEGG: rha:RHA1_ro09047 1.1e-29 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.981
EDS06137.1
KEGG: ava:Ava_B0213 2.9e-77 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.976
oppD_4
KEGG: reh:H16_A1303 4.9e-68 ABC-type transporter, ATPase component: PepT family; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.964
appA_3
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 8.8e-12 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Extracellular, score: 8.61.
 
 
 0.962
ddpF
ABC transporter, ATP-binding protein; KEGG: ava:Ava_C0015 1.5e-48 ABC transporter-like; COG: COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.941
oppD_2
KEGG: cch:Cag_1883 2.3e-77 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.940
DppB_4
KEGG: rha:RHA1_ro09047 1.7e-58 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.920
nikB
KEGG: rha:RHA1_ro09047 4.9e-52 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.920
DppB_2
KEGG: rha:RHA1_ro09047 6.6e-48 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.919
dppB_1
KEGG: rha:RHA1_ro09047 1.6e-44 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.919
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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