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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpFABC transporter, ATP-binding protein; KEGG: ava:Ava_C0015 1.5e-48 ABC transporter-like; COG: COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (206 aa)    
Predicted Functional Partners:
EDS06137.1
KEGG: ava:Ava_B0213 2.9e-77 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
 0.966
dppC
ABC transporter, permease protein; KEGG: syn:sll0739 0.0032 modBC; ABC-type molybdate transport system permease/ATP-binding protein K02018; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.942
dppB_3
KEGG: rha:RHA1_ro09047 1.1e-29 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.925
appA_3
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 8.8e-12 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Extracellular, score: 8.61.
 
  
 0.916
EDS06139.1
Hypothetical protein.
       0.639
EDS06140.1
Hypothetical protein; COG: NOG24928 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.97.
       0.561
oppD_3
KEGG: rru:Rru_A0589 7.0e-76 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
0.526
gsiD
KEGG: rha:RHA1_ro08170 0.00013 ABC transporter, permease component; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.518
EDS06141.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.493
EDS06142.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.450
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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