Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06142.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (42 aa)    
Predicted Functional Partners:
EDS06141.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.697
EDS06140.1
Hypothetical protein; COG: NOG24928 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.97.
       0.607
EDS06139.1
Hypothetical protein.
       0.534
ddpF
ABC transporter, ATP-binding protein; KEGG: ava:Ava_C0015 1.5e-48 ABC transporter-like; COG: COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.450
CpdA_1
Ser/Thr phosphatase family protein; KEGG: eci:UTI89_C1627 7.4e-10 entS; EntS/YbdA MFS transporter; COG: COG1409 Predicted phosphohydrolases; Psort location: Extracellular, score: 9.04.
       0.432
EDS06144.1
Hypothetical protein.
       0.432
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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