Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prdA_6Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (162 aa)    
Predicted Functional Partners:
prdA_5
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
   
 0.990
prdA_3
Hypothetical protein; KEGG: tte:TTE1879 1.9e-05 GrdE proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
   
 0.968
prdA
D-proline reductase, PrdA proprotein; Psort location: Cytoplasmic, score: 8.87.
     0.949
prdB
D-proline reductase, PrdB subunit; KEGG: chy:CHY_2393 1.2e-09 grdB; glycine reductase, selenoprotein B; COG: NOG06475 non supervised orthologous group.
   
 0.840
EDS06618.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.791
EDS06620.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.791
EDS06614.1
Hypothetical protein; COG: NOG11520 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.788
rnfC-2
Respiratory-chain NADH dehydrogenase 51 Kd subunit; KEGG: eci:UTI89_C1819 1.8e-18 rnfC; electron transport complex protein RnfC K03615; COG: COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.781
EDS06623.1
KEGG: bce:BC2835 1.2e-66 proline racemase K01777; COG: COG3938 Proline racemase; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.739
EDS07538.1
Hypothetical protein; COG: COG3104 Dipeptide/tripeptide permease; Psort location: CytoplasmicMembrane, score: 9.75.
  
     0.715
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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