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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06166.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.80. (171 aa)    
Predicted Functional Partners:
EDS06163.1
FAD binding domain protein; KEGG: plt:Plut_0570 1.6e-39 D-lactate dehydrogenase (cytochrome) K00102; COG: COG0277 FAD/FMN-containing dehydrogenases; Psort location: Cytoplasmic, score: 8.87.
       0.773
carD_1
COG: COG2086 Electron transfer flavoprotein, beta subunit; Psort location: Cytoplasmic, score: 8.87.
       0.773
etfA-3
Electron transfer flavoprotein FAD-binding domain protein; KEGG: ctc:CTC01387 7.1e-16 acyl-coA dehydrogenase K00248; COG: COG1145 Ferredoxin; Psort location: Cytoplasmic, score: 8.87.
       0.773
betL
BCCT family transporter; KEGG: shn:Shewana3_2719 1.5e-50 choline/carnitine/betaine transporter K01718; COG: COG1292 Choline-glycine betaine transporter; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.773
glpP
COG: COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding); Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS06169.1
Hypothetical protein; COG: COG1578 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.727
EDS06170.1
Hypothetical protein.
       0.727
KduD_2
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: ecs:ECs3630 1.5e-89 putative oxidoreductase; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
       0.727
EDS06160.1
FAD binding domain protein; KEGG: eci:UTI89_C3136 9.0e-163 hypothetical protein K00803; COG: COG0277 FAD/FMN-containing dehydrogenases; Psort location: Cytoplasmic, score: 8.87.
       0.701
EtfB
COG: COG2086 Electron transfer flavoprotein, beta subunit; Psort location: Cytoplasmic, score: 8.87.
       0.701
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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