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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06109.1Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 6.7e-05 serine/threonine protein kinase with TPR repeats K00908; Psort location: Cytoplasmic, score: 8.87. (174 aa)    
Predicted Functional Partners:
EDS06107.1
Hypothetical protein; KEGG: sat:SYN_00474 1.4e-20 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit K01587; COG: COG1691 NCAIR mutase (PurE)-related proteins.
       0.773
larC-2
TIGR00299 family protein; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.
       0.773
EDS06110.1
Hypothetical protein.
       0.773
EDS06104.1
Hypothetical protein; COG: COG4584 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.762
EDS06105.1
IstB-like ATP-binding protein; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
       0.762
EDS06106.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.762
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.629
EDS08609.1
Glycosyltransferase, group 2 family protein; KEGG: stm:STM2085 7.7e-54 rfbN; LPS side chain defect: rhamnosyl transferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.605
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.528
HtpG_2
Ser/Thr phosphatase family protein; KEGG: hpa:HPAG1_0211 1.2e-08 chaperone and heat shock protein 90; COG: COG0326 Molecular chaperone, HSP90 family; Psort location: Cytoplasmic, score: 9.65.
   
 0.516
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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