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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS06112.1Putative redox-active disulfide protein 2; COG: COG0526 Thiol-disulfide isomerase and thioredoxins. (121 aa)    
Predicted Functional Partners:
EDS06113.1
Hypothetical protein; COG: COG0701 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.946
EDS06974.1
COG: COG0701 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.818
nrdE1
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.801
EDS05359.1
COG: COG0701 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.801
hndC_3
4Fe-4S binding domain protein; KEGG: swo:Swol_1701 3.0e-194 NADH dehydrogenase (quinone) K05903; COG: COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.702
EDS06114.1
Hypothetical protein.
       0.619
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.579
arsR
KEGG: rru:Rru_A1450 5.9e-10 transcriptional regulator, ArsR family; COG: COG0640 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.569
sodC
KEGG: cno:NT01CX_1771 1.4e-29 superoxide dismutase K00518; COG: COG2032 Cu/Zn superoxide dismutase; Psort location: Cytoplasmic, score: 8.87.
   
 0.560
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.555
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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