Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dnaI_1Hypothetical protein; KEGG: spi:MGAS10750_Spy1680 5.5e-44 replicative DNA helicase K01529; COG: COG1484 DNA replication protein. (284 aa)    
Predicted Functional Partners:
repA
Replication initiator protein A domain protein; COG: NOG34358 non supervised orthologous group.
 
    0.942
EDS08789.1
Phage replisome organizer N-terminal domain protein; COG: COG3935 Putative primosome component and related proteins.
 
    0.785
EDS08787.1
Hypothetical protein.
 
     0.781
EDS08791.1
Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
 
     0.779
EDS06050.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS08792.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.771
EDS08786.1
Resolvase, N-terminal domain protein; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
 
     0.768
EDS06051.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.757
EDS06052.1
Site-specific recombinase, phage integrase family; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
       0.757
EDS08794.1
Hypothetical protein.
  
     0.728
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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