Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS06078.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (149 aa)    
Predicted Functional Partners:
EDS06944.1
Hypothetical protein; KEGG: efa:EF2060 0.0083 cydB; cytochrome d ubiquinol oxidase, subunit II K00426; COG: NOG16658 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.788
EDS06077.1
Hypothetical protein; COG: COG3655 Predicted transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.770
EDS06261.1
Hypothetical protein.
  
     0.624
EDS06262.1
Hypothetical protein.
  
     0.564
EDS06263.1
Hypothetical protein.
  
     0.544
EDS06079.1
Hypothetical protein; COG: COG3436 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.540
EDS06080.1
Hypothetical protein; COG: COG3436 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.540
EDS05453.1
Hypothetical protein; COG: NOG30793 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.473
EDS05710.1
Hypothetical protein.
  
     0.468
EDS08620.1
Hypothetical protein.
  
     0.407
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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