Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ynjERhodanese-like protein; KEGG: cpf:CPF_1308 2.5e-87 putative thiosulfate sulfurtransferase K01010; COG: COG2897 Rhodanese-related sulfurtransferase. (466 aa)    
Predicted Functional Partners:
iscS_2
Aminotransferase, class V; KEGG: tte:TTE1663 8.8e-101 nifS; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487; COG: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; Psort location: Cytoplasmic, score: 8.87.
  
 0.913
nifS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
 0.913
YdjZ_2
SNARE-like domain protein; KEGG: hch:HCH_01003 6.6e-14 probable mercuric reductase K00520; COG: COG0398 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.726
EDS05406.1
ABC transporter, solute-binding protein; COG: COG4134 ABC-type uncharacterized transport system, periplasmic component.
 
  
 0.663
ydjZ_1
SNARE-like domain protein; KEGG: pat:Patl_0395 1.8e-17 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00520; COG: COG0398 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.601
sphR_2
Response regulator receiver domain protein; KEGG: ava:Ava_3369 5.6e-35 two component transcriptional regulator, winged helix family; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.556
EDS06092.1
Phosphotransferase enzyme family; KEGG: ehi:1.t00095 0.0058 choline/ethanolamine kinase, putative K00894; COG: NOG22933 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.544
potH
KEGG: ava:Ava_0243 2.1e-08 molybdate ABC transporter, permease protein K02018; COG: COG1176 ABC-type spermidine/putrescine transport system, permease component I; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.538
tlpA_2
Redoxin family protein; KEGG: mbo:Mb3945 2.4e-06 trxC; thioredoxin TrxC (TRX) (MPT46) K03671; COG: COG0526 Thiol-disulfide isomerase and thioredoxins.
    
 0.534
phnV
KEGG: ava:Ava_0243 1.3e-08 molybdate ABC transporter, permease protein K02018; COG: COG1177 ABC-type spermidine/putrescine transport system, permease component II; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.508
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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