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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05993.1Alcohol acetyltransferase; COG: NOG32388 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 7.63. (606 aa)    
Predicted Functional Partners:
NlhH
Hydrolase, alpha/beta domain protein; KEGG: bur:Bcep18194_B1213 1.0e-44 lipolytic enzyme K01046; COG: COG0657 Esterase/lipase; Psort location: Cytoplasmic, score: 9.98.
 
    0.950
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.773
ade
Adenine deaminase; KEGG: cac:CAC0887 4.4e-122 adeC; adenine deaminase K01486; COG: COG1001 Adenine deaminase; Psort location: Cytoplasmic, score: 8.87; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
       0.773
EDS05996.1
Hypothetical protein; COG: COG5523 Predicted integral membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.750
SrfAA
AMP-binding enzyme; KEGG: ava:Ava_1613 5.8e-204 non-ribosomal peptide synthase K00644; COG: COG1020 Non-ribosomal peptide synthetase modules and related proteins; Psort location: Cytoplasmic, score: 9.96; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.700
EDS05991.1
CarD-like protein; Psort location: Cytoplasmic, score: 8.87.
       0.547
EDS05153.1
Hypothetical protein; COG: COG5441 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.523
yqeC
Putative selenium-dependent hydroxylase accessory protein YqeC; COG: NOG13189 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.480
EDS06385.1
Hypothetical protein; COG: NOG07673 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.467
mobA_3
Selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: hma:pNG7236 2.8e-14 glmU; UDP-N-acetylglucosamine pyrophosphorylase K00972; COG: COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; Psort location: Cytoplasmic, score: 8.87.
  
    0.446
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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