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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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dapEPutative selenium metabolism hydrolase; KEGG: eci:UTI89_C3257 3.1e-144 ygeY; putative deacetylase K01439; COG: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; Psort location: Cytoplasmic, score: 8.87. (437 aa)    
Predicted Functional Partners:
dpaL
KEGG: efa:EF2579 3.4e-147 diaminopropionate ammonia-lyase, putative; COG: COG1171 Threonine dehydratase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.952
ygeW
Putative carbamoyltransferase YgeW; KEGG: mta:Moth_1996 4.8e-45 ornithine carbamoyltransferase K00611; COG: COG0078 Ornithine carbamoyltransferase; Psort location: Cytoplasmic, score: 9.98; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.926
EDS06005.1
YheO-like protein; COG: COG2964 Uncharacterized protein conserved in bacteria.
 
     0.919
pucD
Selenium-dependent molybdenum hydroxylase 1; KEGG: rde:RD1_1533 8.1e-98 mop; aldehyde oxidoreductase, putative K00157; COG: COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; Psort location: CytoplasmicMembrane, score: 9.49.
 
   
 0.901
sfrB_2
Putative selenate reductase, YgfK subunit; KEGG: eci:UTI89_C3263 4.3e-195 ygfK; hypothetical protein YgfK K05299; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score: 9.98.
 
  
 0.865
EDS06002.1
Putative selenium metabolism protein SsnA; KEGG: eci:UTI89_C3264 4.0e-57 SsnA protein K01564; COG: COG0402 Cytosine deaminase and related metal-dependent hydrolases; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.859
hydA
Dihydropyrimidinase; KEGG: efa:EF2580 1.4e-111 D-hydantoinase K01464; COG: COG0044 Dihydroorotase and related cyclic amidohydrolases; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.804
arcC
Carbamate kinase; KEGG: ssn:SSO_3025 2.0e-101 yqeA; putative kinase K00926; COG: COG0549 Carbamate kinase; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.721
ndhF
KEGG: mta:Moth_1959 1.1e-70 molybdopterin dehydrogenase, FAD-binding K00087; COG: COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.693
mobA_3
Selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: hma:pNG7236 2.8e-14 glmU; UDP-N-acetylglucosamine pyrophosphorylase K00972; COG: COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; Psort location: Cytoplasmic, score: 8.87.
 
     0.663
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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