Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
copACopper-exporting ATPase; KEGG: efa:EF0298 2.0e-194 copper-translocating P-type ATPase K01533; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 9.99. (840 aa)    
Predicted Functional Partners:
sodC
KEGG: cno:NT01CX_1771 1.4e-29 superoxide dismutase K00518; COG: COG2032 Cu/Zn superoxide dismutase; Psort location: Cytoplasmic, score: 8.87.
  
 0.972
csoR_1
COG: COG1937 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.906
copZ
Heavy metal-associated domain protein; KEGG: bpm:BURPS1710b_A1755 1.7e-07 cueA; copper-translocating P-type ATPase K01533; COG: COG2608 Copper chaperone.
  
 
 0.835
blaI
Transcriptional regulator, BlaI/MecI/CopY family; KEGG: bcz:BCZK0993 2.2e-24 blaI; beta-lactamase (penicillinase) repressor K01467; COG: COG3682 Predicted transcriptional regulator.
  
  
 0.821
PpiB
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
   0.781
ctpC
KEGG: dvu:DVU3332 3.5e-145 heavy metal translocating P-type ATPase; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
0.699
cadA
Cadmium-exporting ATPase; KEGG: btl:BALH_0536 3.1e-153 cation-transporting ATPase, P-type; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
0.698
cadA-2
Cadmium-exporting ATPase; KEGG: tte:TTE2467 5.1e-144 zntA2; cation transport ATPases; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
0.691
nrdD-2
KEGG: tde:TDE1331 2.6e-220 nrdD; anaerobic ribonucleoside triphosphate reductase K00527; COG: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.661
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.652
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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