Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS05875.1COG: COG4805 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (578 aa)    
Predicted Functional Partners:
EDS07659.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.630
EDS05759.1
Hypothetical protein.
  
     0.617
EDS07956.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.594
natR_1
LytTr DNA-binding domain protein; KEGG: rru:Rru_A0376 8.7e-07 transcriptional regulator, LytR/AlgR family K07705; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 8.87.
       0.535
EDS07652.1
Hypothetical protein; KEGG: ctc:CTC00811 3.5e-07 fumarate reductase flavoprotein subunit precursor K00244; COG: COG3976 Uncharacterized protein conserved in bacteria.
  
     0.515
EDS06859.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.507
EDS05969.1
Hypothetical protein.
  
     0.495
EDS08713.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.487
EDS06525.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.477
EDS08111.1
Hypothetical protein; KEGG: ccr:CC0365 0.0040 F-type H+-transporting ATPase b chain K02109; COG: NOG17862 non supervised orthologous group.
  
     0.470
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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