Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS05889.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (61 aa)    
Predicted Functional Partners:
EDS05887.1
Hypothetical protein.
       0.773
EDS05888.1
Hypothetical protein; COG: COG4832 Uncharacterized conserved protein; ORF located using Blastx.
       0.773
folA-2
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
       0.773
EDS05886.1
KEGG: bca:BCE_3047 6.8e-07 glyoxalase family protein K01759; COG: COG0346 Lactoylglutathione lyase and related lyases; Psort location: Cytoplasmic, score: 8.87.
       0.757
EDS05891.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.709
EDS05885.1
Hypothetical protein.
       0.641
EDS05884.1
Hypothetical protein; COG: COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.555
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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