STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS05893.1Hypothetical protein; COG: COG1434 Uncharacterized conserved protein. (70 aa)    
Predicted Functional Partners:
EDS05894.1
Hypothetical protein.
       0.689
EDS05895.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.689
EDS05892.1
Hypothetical protein.
       0.481
EDS08598.1
Hypothetical protein; COG: COG1434 Uncharacterized conserved protein.
  
   
 0.479
metG-2
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.447
ctpE
E1-E2 ATPase; KEGG: lsl:LSL_1210 1.6e-259 cation-transporting ATPase; COG: COG0474 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.428
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.