STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PrpC2KEGG: lla:L67186 6.4e-137 gltA; citrate synthase K01647; COG: COG0372 Citrate synthase; Psort location: Cytoplasmic, score: 9.98. (459 aa)    
Predicted Functional Partners:
DmdA_2
Aconitase domain protein; KEGG: ecp:ECP_0784 2.8e-239 aconitate hydratase K01680; COG: COG1048 Aconitase A; Psort location: Cytoplasmic, score: 9.98.
 
 0.994
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 0.971
EDS08311.1
HMGL-like protein; KEGG: tte:TTE0472 2.0e-30 leuA2; homocitrate synthase K01655:K02594; COG: COG0119 Isopropylmalate/homocitrate/citramalate synthases; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.920
EDS04956.1
Hypothetical protein; KEGG: lac:LBA0466 8.7e-133 phosphoenolpyruvate carboxykinase (ATP) K01610; COG: COG1866 Phosphoenolpyruvate carboxykinase (ATP).
  
 
 0.917
icd
Isocitrate dehydrogenase, NADP-dependent; KEGG: tte:TTE0387 4.1e-158 icd; Isocitrate dehydrogenases K00031; COG: COG0538 Isocitrate dehydrogenases; Psort location: Cytoplasmic, score: 8.87; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
 
 
 0.911
ttdA
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; KEGG: cac:CAC3091 8.4e-96 fumarate hydratase, subunit A (N-terminal domain of FumA E.coli) class I K01677; COG: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.911
gdhA
Glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; KEGG: tde:TDE0997 6.6e-119 gdhA; glutamate dehydrogenase K00261; COG: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Psort location: Cytoplasmic, score: 9.98; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.885
gdh
Glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; KEGG: lsl:LSL_1297 6.0e-189 gdhA; NADP-specific glutamate dehydrogenase K00262; COG: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Psort location: Cytoplasmic, score: 9.98; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.885
fumB
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; KEGG: chy:CHY_1374 5.7e-58 fumarate hydratase, beta subunit K01678; COG: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.881
FumA
KEGG: wsu:WS1767 1.5e-38 fumB_beta; fumarate hydratase B, beta subunit K01678; COG: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
  
 
 0.881
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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